PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA005076-PA
Common NameOsI_04979
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 70aa    MW: 8050.3 Da    PI: 10.5279
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA005076-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.71.1e-261160251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rie+k  rqv fskRr+g++KKA+EL  LCdaeva+++fs+ gklyeyss
  BGIOSGA005076-PA 11 RIEDKASRQVRFSKRRAGLFKKAFELALLCDAEVALLVFSPAGKLYEYSS 60
                      8***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.735262IPR002100Transcription factor, MADS-box
SMARTSM004329.3E-33261IPR002100Transcription factor, MADS-box
CDDcd002657.63E-34364No hitNo description
PRINTSPR004041.4E-27424IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-27463IPR002100Transcription factor, MADS-box
PfamPF003195.0E-261158IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-272439IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-273960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MARRGRVQLR RIEDKASRQV RFSKRRAGLF KKAFELALLC DAEVALLVFS PAGKLYEYSS  60
SSVHIEQDYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A2e-18463261MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B2e-18463261MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C2e-18463261MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_D2e-18463261MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3kov_A2e-18463261Myocyte-specific enhancer factor 2A
3kov_B2e-18463261Myocyte-specific enhancer factor 2A
3kov_I2e-18463261Myocyte-specific enhancer factor 2A
3kov_J2e-18463261Myocyte-specific enhancer factor 2A
3mu6_A1e-18463261Myocyte-specific enhancer factor 2A
3mu6_B1e-18463261Myocyte-specific enhancer factor 2A
3mu6_C1e-18463261Myocyte-specific enhancer factor 2A
3mu6_D1e-18463261Myocyte-specific enhancer factor 2A
3p57_A2e-18463261Myocyte-specific enhancer factor 2A
3p57_B2e-18463261Myocyte-specific enhancer factor 2A
3p57_C2e-18463261Myocyte-specific enhancer factor 2A
3p57_D2e-18463261Myocyte-specific enhancer factor 2A
3p57_I2e-18463261Myocyte-specific enhancer factor 2A
3p57_J2e-18463261Myocyte-specific enhancer factor 2A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.203821e-101callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166363211e-101
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0129187e-99AP012918.1 Oryza sativa Indica Group DNA, chromosome 1, BAC clone: K0158A04, cultivar: Kasalath, complete sequence.
GenBankCP0126097e-99CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankCT8346537e-99CT834653.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121C03, full insert sequence.
GenBankDQ5396177e-99DQ539617.1 Oryza sativa (indica cultivar-group) MADS-box protein 84 (MADS84) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971093.18e-37PREDICTED: truncated transcription factor CAULIFLOWER D-like
SwissprotQ9XJ604e-26MAD50_ORYSJ; MADS-box transcription factor 50
TrEMBLA0A0D3EY027e-44A0A0D3EY02_9ORYZ; Uncharacterized protein
TrEMBLA2WYH77e-44A2WYH7_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA005076-PA2e-43(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.13e-27AGAMOUS-like 14